Prayer for the intentions of the Holy Father

During the Month of November, the faithful are encouraged to gain Indulgences for the souls in Purgatory. As explained above, one of the conditions to gain the indulgences, it is to pray for the intentions of the pope. But, looking at some of the actions of Pope Francis, one may question if we should still pray for ‘our Holy Father’s intentions’, while it appears that such pope may have bad intentions?